PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g102740.2.1

Common Name

LOC101250453

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 414aa MW: 46927.9 Da PI: 6.6308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g102740.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.6	5.9e-50	51	176	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + Solyc01g102740.2.1 51 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 140 79*************************.89***********8778899********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg +++W+m+eyrl Solyc01g102740.2.1 141 RTENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 176 ********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.002	50	197	IPR003441	NAC domain
SuperFamily	SSF101941	1.11E-55	50	196	IPR003441	NAC domain
Pfam	PF02365	4.8E-25	52	176	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MAIVPFITTN MSQSQQQHQQ QQDDDDNNNI NNTIKGDDND DDDDHEHDMV MPGFRFHPTE 60 EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV PRDRKYRNGD 120 RPNRVTTSGY WKATGADRMI RTENSRSIGL KKTLVFYSGK APKGIRSSWI MNEYRLPHHE 180 TERLQKAEIS LCRVYKRAGV EDHPSLPRSL LTTRASSSSS SRGTTPIKKQ QVAQQDSSLI 240 SPLYLGQSSQ QQIDEKLSTE TSASSTSTDH HHHHQHHVAT SLGLNSLSNS YTNIALDPIG 300 SAVNITTSTL TPFTSLVATT NNTTDDLHRL INLDQVVAFH NNQHHFHPPP GVVPQQYPPP 360 LLLQQPQSLL HQGSLPSSAA AAFSDRLWEW NSINQTDGSC KDDHYDQGNN PFK*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MAIVPFITTN MSQSQQQHQQ QQDDDDNNNI NNTIKGDDND DDDDHEHDMV MPGFRFHPTE  60
EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV PRDRKYRNGD  120
RPNRVTTSGY WKATGADRMI RTENSRSIGL KKTLVFYSGK APKGIRSSWI MNEYRLPHHE  180
TERLQKAEIS LCRVYKRAGV EDHPSLPRSL LTTRASSSSS SRGTTPIKKQ QVAQQDSSLI  240
SPLYLGQSSQ QQIDEKLSTE TSASSTSTDH HHHHQHHVAT SLGLNSLSNS YTNIALDPIG  300
SAVNITTSTL TPFTSLVATT NNTTDDLHRL INLDQVVAFH NNQHHFHPPP GVVPQQYPPP  360
LLLQQPQSLL HQGSLPSSAA AAFSDRLWEW NSINQTDGSC KDDHYDQGNN PFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	52	197	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	52	197	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	52	197	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	52	197	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-56	52	197	19	165	NAC domain-containing protein 19
4dul_B	4e-56	52	197	19	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.20965	0.0	cell culture\| leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246255	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-65j3 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230395.1	0.0	PREDICTED: NAC domain-containing protein 55 isoform X2
TrEMBL	K4B1K2	0.0	K4B1K2_SOLLC; Uncharacterized protein
STRING	Solyc01g102740.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-109	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Solyc01g102740.2.1
Entrez Gene	101250453

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]